ERR2598235
fetal · fetal
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- fetal
- cancer_type_detailed
- —
- subtype
- fetal
- cancer_type
- fetal
- subtype
- fetal
- sex
- fetal
- race
- fetal
- fetal_age_hindbrain
- 8
- umap1_2d
- -4.320594872
- umap2_2d
- 2.980833993
- umap1_3d
- -2.707093436
- umap2_3d
- 2.84282424
- umap3_3d
- -1.435391664
- dataset
- fetal
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.550
- E2F_TARGETS+0.520
- G2M_CHECKPOINT+0.480
- DNA_REPAIR+0.460
- OXIDATIVE_PHOSPHORYLATION+0.320
- MYC_TARGETS_V2+0.270
- HEDGEHOG_SIGNALING+0.260
- WNT_BETA_CATENIN_SIGNALING+0.260
- MITOTIC_SPINDLE+0.250
- MTORC1_SIGNALING+0.210
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.530
- INFLAMMATORY_RESPONSE-0.520
- INTERFERON_GAMMA_RESPONSE-0.480
- IL6_JAK_STAT3_SIGNALING-0.470
- ALLOGRAFT_REJECTION-0.460
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.450
- TNFA_SIGNALING_VIA_NFKB-0.410
- IL2_STAT5_SIGNALING-0.400
- COMPLEMENT-0.360
- ANGIOGENESIS-0.340
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | ERR2598256 | fetal | fetal | 0.980 |
| 2 | ERR2598212 | fetal | fetal | 0.980 |
| 3 | ERR2598250 | fetal | fetal | 0.966 |
| 4 | ERR2598206 | fetal | fetal | 0.948 |
| 5 | ERR2598238 | fetal | fetal | 0.929 |
| 6 | BS_K25F4J3V | ATRT | — | 0.926 |
| 7 | BS_37GTVG4N | Embryonal tumors | — | 0.922 |
| 8 | C3L-01285 | — | cohortSQ2 | 0.920 |
| 9 | SRR13780247 | — | cohortMD1 | 0.920 |
| 10 | TCGA-56-7223-01A-11R-2045-07 | — | cohortMD1 | 0.919 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 16 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| MYC_TARGETS_V1 | 0.550 | Inavolisib | — uncovered |
| E2F_TARGETS | 0.520 | Inavolisib | — uncovered |
| G2M_CHECKPOINT | 0.480 | Inavolisib | — uncovered |
| DNA_REPAIR | 0.460 | Idelalisib | — uncovered |
| OXIDATIVE_PHOSPHORYLATION | 0.320 | Remibrutinib | — uncovered |
| MYC_TARGETS_V2 | 0.270 | Idelalisib | — uncovered |
| HEDGEHOG_SIGNALING | 0.260 | Inavolisib | — uncovered |
| WNT_BETA_CATENIN_SIGNALING | 0.260 | Inavolisib | — uncovered |
| MITOTIC_SPINDLE | 0.250 | Inavolisib | — uncovered |
| MTORC1_SIGNALING | 0.210 | Inavolisib | — uncovered |
| NOTCH_SIGNALING | 0.190 | Inavolisib | — uncovered |
| SPERMATOGENESIS | 0.190 | Inavolisib | — uncovered |
| UNFOLDED_PROTEIN_RESPONSE | 0.160 | Idelalisib | — uncovered |
| PANCREAS_BETA_CELLS | 0.100 | Cobimetinib | — uncovered |
| CHOLESTEROL_HOMEOSTASIS | 0.090 | Remibrutinib | — uncovered |
| GLYCOLYSIS | 0.050 | Inavolisib | — uncovered |