ERR2598238
fetal · fetal
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- fetal
- cancer_type_detailed
- —
- subtype
- fetal
- cancer_type
- fetal
- subtype
- fetal
- sex
- fetal
- race
- fetal
- fetal_age_hindbrain
- 8
- umap1_2d
- -4.321041008
- umap2_2d
- 3.324340532
- umap1_3d
- -2.502554142
- umap2_3d
- 2.887837582
- umap3_3d
- -1.311858839
- dataset
- fetal
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.500
- G2M_CHECKPOINT+0.420
- E2F_TARGETS+0.410
- MITOTIC_SPINDLE+0.390
- WNT_BETA_CATENIN_SIGNALING+0.380
- NOTCH_SIGNALING+0.360
- HEDGEHOG_SIGNALING+0.350
- DNA_REPAIR+0.340
- OXIDATIVE_PHOSPHORYLATION+0.270
- MTORC1_SIGNALING+0.220
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.560
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- INTERFERON_GAMMA_RESPONSE-0.490
- ALLOGRAFT_REJECTION-0.460
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.440
- COMPLEMENT-0.430
- COAGULATION-0.410
- IL2_STAT5_SIGNALING-0.380
- TNFA_SIGNALING_VIA_NFKB-0.360
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | ERR2598229 | fetal | fetal | 0.971 |
| 2 | ERR2598195 | fetal | fetal | 0.945 |
| 3 | ERR2598206 | fetal | fetal | 0.945 |
| 4 | ERR2598212 | fetal | fetal | 0.935 |
| 5 | ERR2598235 | fetal | fetal | 0.929 |
| 6 | MDT-AP-0432 | Med | Medulloblastoma | 0.911 |
| 7 | BS_1EN5V3XW | high-grade glioma | — | 0.906 |
| 8 | ERR2598198 | fetal | fetal | 0.906 |
| 9 | 7DC6D598-8506-4680-81DF-C1D0F1B5C27D | — | — | 0.901 |
| 10 | ERR2598196 | fetal | fetal | 0.898 |