EPT0521
EPN · Posterior Fossa EPN
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- Posterior Fossa EPN
- cancer_type
- EPN
- subtype
- Posterior Fossa EPN
- e1_e2
- E2
- umap1_2d
- -5.540894529
- umap2_2d
- 0.284603131
- umap1_3d
- -0.272986655
- umap2_3d
- 3.295786765
- umap3_3d
- -0.184897954
- dataset
- EPN-Toronto
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.470
- NOTCH_SIGNALING+0.340
- WNT_BETA_CATENIN_SIGNALING+0.330
- INTERFERON_GAMMA_RESPONSE+0.280
- MITOTIC_SPINDLE+0.250
- FATTY_ACID_METABOLISM+0.240
- HEME_METABOLISM+0.180
- CHOLESTEROL_HOMEOSTASIS+0.170
- MYC_TARGETS_V2+0.140
- MYOGENESIS+0.140
Top 10 suppressed
- PANCREAS_BETA_CELLS-0.370
- TNFA_SIGNALING_VIA_NFKB-0.290
- INFLAMMATORY_RESPONSE-0.260
- MTORC1_SIGNALING-0.250
- MYC_TARGETS_V1-0.240
- KRAS_SIGNALING_UP-0.230
- ANGIOGENESIS-0.220
- IL2_STAT5_SIGNALING-0.220
- ALLOGRAFT_REJECTION-0.180
- HYPOXIA-0.170
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 49718_S125 | — | cohortA1 | 0.635 |
| 2 | SRR8942967 | — | — | 0.628 |
| 3 | 5547236E-885B-4CE8-B733-9D2E2D60941C | — | — | 0.627 |
| 4 | TCGA-E2-A10B-01A-11R-A10J-07 | — | B | 0.604 |
| 5 | MBCproject_6016_T1_RNA | — | A | 0.596 |
| 6 | MNG671 | — | — | 0.594 |
| 7 | SRR6013601 | — | cohortA1 | 0.582 |
| 8 | MNG294 | — | — | 0.579 |
| 9 | MNG1086 | — | — | 0.577 |
| 10 | MNG909 | — | — | 0.575 |