SRR818418
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.369
- OXIDATIVE_PHOSPHORYLATION+0.350
- FATTY_ACID_METABOLISM+0.281
- PANCREAS_BETA_CELLS+0.252
- SPERMATOGENESIS+0.214
- XENOBIOTIC_METABOLISM+0.209
- BILE_ACID_METABOLISM+0.154
- MYOGENESIS+0.153
- HEDGEHOG_SIGNALING+0.118
- UV_RESPONSE_DN+0.112
Top 10 suppressed
- MYC_TARGETS_V2-0.531
- G2M_CHECKPOINT-0.447
- IL6_JAK_STAT3_SIGNALING-0.426
- E2F_TARGETS-0.420
- UNFOLDED_PROTEIN_RESPONSE-0.409
- TNFA_SIGNALING_VIA_NFKB-0.396
- ALLOGRAFT_REJECTION-0.374
- INTERFERON_ALPHA_RESPONSE-0.363
- INTERFERON_GAMMA_RESPONSE-0.360
- MYC_TARGETS_V1-0.360
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1498640 | GTEX | — | 0.958 |
| 2 | SRR1312103 | GTEX | — | 0.950 |
| 3 | SRR1465114 | GTEX | — | 0.936 |
| 4 | SRR1416999 | GTEX | — | 0.931 |
| 5 | SRR1474333 | GTEX | — | 0.928 |
| 6 | SRR1435293 | GTEX | — | 0.923 |
| 7 | SRR1350456 | GTEX | — | 0.923 |
| 8 | BS_KZPR01BD | DNET | — | 0.921 |
| 9 | SRR1445347 | GTEX | — | 0.921 |
| 10 | SRR1324431 | GTEX | — | 0.920 |