7478db87-0751-4771-941f-9fccdf01853d
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.500
- G2M_CHECKPOINT+0.400
- MITOTIC_SPINDLE+0.400
- ANGIOGENESIS+0.300
- MYC_TARGETS_V1+0.300
- WNT_BETA_CATENIN_SIGNALING+0.300
- MYC_TARGETS_V2+0.200
- NOTCH_SIGNALING+0.200
- UV_RESPONSE_DN+0.200
- APICAL_SURFACE+0.100
Top 10 suppressed
- INTERFERON_GAMMA_RESPONSE-0.600
- ALLOGRAFT_REJECTION-0.500
- INTERFERON_ALPHA_RESPONSE-0.500
- TNFA_SIGNALING_VIA_NFKB-0.500
- COMPLEMENT-0.400
- INFLAMMATORY_RESPONSE-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.400
- APOPTOSIS-0.300
- COAGULATION-0.300
- ESTROGEN_RESPONSE_EARLY-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | ec882950-7595-4ab7-a8b8-86d1422a948a | — | — | 0.878 |
| 2 | C3N-02435 | — | cohortSQ1 | 0.862 |
| 3 | TCGA-56-8083-01A-11R-2247-07 | — | cohortMD1 | 0.862 |
| 4 | SRR8392888 | — | cohortMD1 | 0.859 |
| 5 | SRR2932838 | — | — | 0.857 |
| 6 | b0be4742-ccb7-48e2-b756-0c384321114e | — | — | 0.855 |
| 7 | TCGA-63-A5MW-01A-11R-A26W-07 | — | cohortMD1 | 0.854 |
| 8 | BS_44A3ES23 | medulloblastoma | — | 0.852 |
| 9 | SRR6013547 | — | cohortMD1 | 0.852 |
| 10 | SAMN03290896 | — | — | 0.849 |