SRR12202486
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.680
- INTERFERON_GAMMA_RESPONSE+0.610
- ALLOGRAFT_REJECTION+0.580
- IL6_JAK_STAT3_SIGNALING+0.440
- INFLAMMATORY_RESPONSE+0.410
- COMPLEMENT+0.300
- PANCREAS_BETA_CELLS+0.230
- HEDGEHOG_SIGNALING+0.210
- IL2_STAT5_SIGNALING+0.210
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.190
Top 10 suppressed
- E2F_TARGETS-0.580
- MYC_TARGETS_V2-0.560
- MYC_TARGETS_V1-0.550
- G2M_CHECKPOINT-0.530
- OXIDATIVE_PHOSPHORYLATION-0.500
- GLYCOLYSIS-0.410
- ADIPOGENESIS-0.400
- MTORC1_SIGNALING-0.390
- CHOLESTEROL_HOMEOSTASIS-0.360
- DNA_REPAIR-0.350
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR8942969 | — | — | 0.953 |
| 2 | TCGA-86-8671-01A-11R-2403-07 | — | cohortMD2 | 0.925 |
| 3 | SRR12202445 | — | — | 0.922 |
| 4 | SRR8518166 | — | D | 0.922 |
| 5 | C3N-00433 | — | cohortMD2 | 0.915 |
| 6 | 46a6f49d-2ab8-41fb-ba8c-951a160e5d08 | — | — | 0.912 |
| 7 | DRR168543 | — | — | 0.912 |
| 8 | MNG64 | — | — | 0.911 |
| 9 | TCGA-22-1005-01A-01R-0692-07 | — | cohortMD2 | 0.910 |
| 10 | TCGA-AQ-A7U7-01A-22R-A352-07 | — | D | 0.910 |