C3N-00433
— · cohortMD2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortMD2
- subtype
- cohortMD2
- age_years
- 57.84804928
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.610
- INTERFERON_GAMMA_RESPONSE+0.610
- ALLOGRAFT_REJECTION+0.550
- IL6_JAK_STAT3_SIGNALING+0.470
- COMPLEMENT+0.420
- INFLAMMATORY_RESPONSE+0.350
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.310
- KRAS_SIGNALING_UP+0.250
- IL2_STAT5_SIGNALING+0.220
- COAGULATION+0.180
Top 10 suppressed
- MYC_TARGETS_V2-0.630
- MYC_TARGETS_V1-0.530
- OXIDATIVE_PHOSPHORYLATION-0.530
- CHOLESTEROL_HOMEOSTASIS-0.430
- DNA_REPAIR-0.360
- GLYCOLYSIS-0.360
- FATTY_ACID_METABOLISM-0.350
- MTORC1_SIGNALING-0.340
- ESTROGEN_RESPONSE_EARLY-0.330
- ESTROGEN_RESPONSE_LATE-0.330
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 767fc312-2c66-43f7-b78e-bf79e03e3a0a | — | — | 0.941 |
| 2 | C3L-03976 | — | cohortMD2 | 0.921 |
| 3 | DRR168577 | — | — | 0.918 |
| 4 | SRR12202486 | — | — | 0.915 |
| 5 | TCGA-55-6971-01A-11R-1949-07 | — | cohortMD2 | 0.907 |
| 6 | SRR8613789 | — | A | 0.902 |
| 7 | AUR-AE6X-TTP1-A-1-0-R-A741-41 | — | D | 0.895 |
| 8 | s0122308 | — | — | 0.894 |
| 9 | TCGA-AQ-A7U7-01A-22R-A352-07 | — | D | 0.892 |
| 10 | SRR12696760 | — | — | 0.890 |