SRR1097392
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- SPERMATOGENESIS+0.200
- UNFOLDED_PROTEIN_RESPONSE+0.197
- DNA_REPAIR+0.190
- OXIDATIVE_PHOSPHORYLATION+0.184
- PROTEIN_SECRETION+0.178
- MYC_TARGETS_V1+0.143
- MYC_TARGETS_V2+0.074
- PEROXISOME+0.041
- MITOTIC_SPINDLE+0.035
- PI3K_AKT_MTOR_SIGNALING+0.034
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.603
- INTERFERON_GAMMA_RESPONSE-0.534
- TNFA_SIGNALING_VIA_NFKB-0.529
- IL6_JAK_STAT3_SIGNALING-0.521
- INFLAMMATORY_RESPONSE-0.511
- ALLOGRAFT_REJECTION-0.462
- TGF_BETA_SIGNALING-0.425
- COAGULATION-0.423
- KRAS_SIGNALING_UP-0.423
- ANGIOGENESIS-0.416
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1451897 | GTEX | — | 0.981 |
| 2 | SRR1410934 | GTEX | — | 0.980 |
| 3 | SRR1500537 | GTEX | — | 0.980 |
| 4 | SRR1374246 | GTEX | — | 0.980 |
| 5 | SRR1315842 | GTEX | — | 0.980 |
| 6 | SRR1393068 | GTEX | — | 0.979 |
| 7 | SRR1429891 | GTEX | — | 0.978 |
| 8 | SRR1405224 | GTEX | — | 0.978 |
| 9 | SRR1441118 | GTEX | — | 0.977 |
| 10 | SRR1441141 | GTEX | — | 0.977 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 10 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| SPERMATOGENESIS | 0.200 | Inavolisib | — uncovered |
| UNFOLDED_PROTEIN_RESPONSE | 0.197 | Idelalisib | — uncovered |
| DNA_REPAIR | 0.190 | Idelalisib | — uncovered |
| OXIDATIVE_PHOSPHORYLATION | 0.184 | Remibrutinib | — uncovered |
| PROTEIN_SECRETION | 0.178 | Remibrutinib | — uncovered |
| MYC_TARGETS_V1 | 0.143 | Inavolisib | — uncovered |
| MYC_TARGETS_V2 | 0.074 | Idelalisib | — uncovered |
| PEROXISOME | 0.041 | Idelalisib | — uncovered |
| MITOTIC_SPINDLE | 0.035 | Inavolisib | — uncovered |
| PI3K_AKT_MTOR_SIGNALING | 0.034 | Inavolisib | — uncovered |