SRR1451897
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.191
- SPERMATOGENESIS+0.172
- DNA_REPAIR+0.121
- MITOTIC_SPINDLE+0.098
- UNFOLDED_PROTEIN_RESPONSE+0.067
- MYC_TARGETS_V2+0.055
- MYC_TARGETS_V1+0.033
- PI3K_AKT_MTOR_SIGNALING+0.007
- PEROXISOME-0.003
- HEME_METABOLISM-0.007
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.609
- TNFA_SIGNALING_VIA_NFKB-0.564
- INTERFERON_GAMMA_RESPONSE-0.544
- IL6_JAK_STAT3_SIGNALING-0.529
- INFLAMMATORY_RESPONSE-0.518
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.513
- COAGULATION-0.500
- ALLOGRAFT_REJECTION-0.491
- ANGIOGENESIS-0.451
- NOTCH_SIGNALING-0.431
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1500537 | GTEX | — | 0.989 |
| 2 | SRR1421140 | GTEX | — | 0.987 |
| 3 | SRR1321244 | GTEX | — | 0.986 |
| 4 | SRR1456841 | GTEX | — | 0.986 |
| 5 | SRR1374246 | GTEX | — | 0.983 |
| 6 | SRR1405224 | GTEX | — | 0.982 |
| 7 | SRR1097392 | GTEX | — | 0.981 |
| 8 | SRR1363810 | GTEX | — | 0.980 |
| 9 | SRR1394450 | GTEX | — | 0.979 |
| 10 | SRR1361714 | GTEX | — | 0.979 |