SRR5088891
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.500
- ALLOGRAFT_REJECTION+0.400
- G2M_CHECKPOINT+0.400
- INTERFERON_ALPHA_RESPONSE+0.400
- INTERFERON_GAMMA_RESPONSE+0.400
- MYC_TARGETS_V1+0.400
- MYC_TARGETS_V2+0.400
- DNA_REPAIR+0.200
- IL2_STAT5_SIGNALING+0.200
- MITOTIC_SPINDLE+0.200
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.400
- ANGIOGENESIS-0.300
- CHOLESTEROL_HOMEOSTASIS-0.300
- COAGULATION-0.300
- HYPOXIA-0.300
- MYOGENESIS-0.300
- NOTCH_SIGNALING-0.300
- FATTY_ACID_METABOLISM-0.200
- PANCREAS_BETA_CELLS-0.200
- PEROXISOME-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | c2d0d36b-83b0-4a2b-a5d7-6567bf5aa557 | — | — | 0.863 |
| 2 | TCGA-E2-A1II-01A-11R-A144-07 | — | E | 0.853 |
| 3 | TCGA-CN-A499-01A-11R-A24H-07 | — | — | 0.846 |
| 4 | TCGA-BH-A1FC-01A-11R-A13Q-07 | — | E | 0.844 |
| 5 | SRR1313144 | — | D | 0.837 |
| 6 | 9eec558d-cc8f-4816-80a5-b6aac4cbb94e | — | — | 0.832 |
| 7 | KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | AML | — | 0.826 |
| 8 | 83a1d91a-3e74-4106-96d1-eec558404c29 | — | — | 0.821 |
| 9 | MBCproject_0095_T3_RNA | — | E | 0.820 |
| 10 | 20100125.TNBC | — | E | 0.815 |