SRR1384234
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.204
- DNA_REPAIR+0.051
- MITOTIC_SPINDLE-0.004
- MYOGENESIS-0.009
- PI3K_AKT_MTOR_SIGNALING-0.015
- SPERMATOGENESIS-0.028
- MYC_TARGETS_V1-0.074
- PEROXISOME-0.089
- PANCREAS_BETA_CELLS-0.092
- APICAL_JUNCTION-0.094
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.617
- TNFA_SIGNALING_VIA_NFKB-0.538
- INTERFERON_GAMMA_RESPONSE-0.513
- INFLAMMATORY_RESPONSE-0.502
- IL6_JAK_STAT3_SIGNALING-0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.492
- APOPTOSIS-0.448
- TGF_BETA_SIGNALING-0.435
- KRAS_SIGNALING_UP-0.425
- IL2_STAT5_SIGNALING-0.424
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1324452 | GTEX | — | 0.986 |
| 2 | SRR1441200 | GTEX | — | 0.983 |
| 3 | SRR1331841 | GTEX | — | 0.983 |
| 4 | SRR1459033 | GTEX | — | 0.982 |
| 5 | SRR1439850 | GTEX | — | 0.982 |
| 6 | SRR1317808 | GTEX | — | 0.981 |
| 7 | SRR1338323 | GTEX | — | 0.980 |
| 8 | SRR1328960 | GTEX | — | 0.980 |
| 9 | SRR1467255 | GTEX | — | 0.980 |
| 10 | SRR1341605 | GTEX | — | 0.980 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 2 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| KRAS_SIGNALING_DN | 0.204 | Remibrutinib | — uncovered |
| DNA_REPAIR | 0.051 | Idelalisib | — uncovered |