MDT-AP-0597
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 51
- os_event
- false
- age_years
- 5
- sex
- M
- new_clusters
- C6
- umap1_2d
- 3.355455589
- umap2_2d
- 7.187319147
- umap1_3d
- 2.323122792
- umap2_3d
- -1.389945163
- umap3_3d
- -4.704739563
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.580
- G2M_CHECKPOINT+0.530
- MITOTIC_SPINDLE+0.480
- DNA_REPAIR+0.390
- PROTEIN_SECRETION+0.260
- HEME_METABOLISM+0.250
- PI3K_AKT_MTOR_SIGNALING+0.250
- UNFOLDED_PROTEIN_RESPONSE+0.220
- TGF_BETA_SIGNALING+0.160
- ADIPOGENESIS+0.140
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.390
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.360
- INTERFERON_GAMMA_RESPONSE-0.330
- KRAS_SIGNALING_DN-0.290
- PANCREAS_BETA_CELLS-0.290
- COAGULATION-0.280
- KRAS_SIGNALING_UP-0.280
- ALLOGRAFT_REJECTION-0.240
- MYOGENESIS-0.230
- INFLAMMATORY_RESPONSE-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-56-8082-01A-11R-2247-07 | — | cohortSQ1 | 0.811 |
| 2 | MDT-AP-3307 | Med | Medulloblastoma | 0.805 |
| 3 | TCGA-AQ-A04H-01B-11R-A10J-07 | — | B | 0.802 |
| 4 | 07463FB6-787C-4FAC-8954-C694EEF27F69 | — | — | 0.792 |
| 5 | TCGA-22-5477-01A-01R-1635-07 | — | cohortSQ2 | 0.786 |
| 6 | MDT-AP-3297 | Med | Medulloblastoma | 0.784 |
| 7 | MDT-AP-0167 | Med | Medulloblastoma | 0.781 |
| 8 | s0094236 | — | — | 0.777 |
| 9 | D38D3FD9-7A58-43D0-876C-6235DA833043 | — | — | 0.777 |
| 10 | 431CF176-101C-482F-B2A4-617ADF6475A8 | — | — | 0.774 |