20030061.LumA
— · A
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- A
- subtype
- A
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- UV_RESPONSE_DN+0.360
- TGF_BETA_SIGNALING+0.220
- ALLOGRAFT_REJECTION+0.180
- IL2_STAT5_SIGNALING+0.160
- IL6_JAK_STAT3_SIGNALING+0.150
- KRAS_SIGNALING_UP+0.120
- WNT_BETA_CATENIN_SIGNALING+0.110
- PROTEIN_SECRETION+0.100
- INFLAMMATORY_RESPONSE+0.050
- INTERFERON_GAMMA_RESPONSE+0.040
Top 10 suppressed
- E2F_TARGETS-0.650
- MYC_TARGETS_V2-0.630
- MYC_TARGETS_V1-0.570
- G2M_CHECKPOINT-0.550
- MTORC1_SIGNALING-0.520
- CHOLESTEROL_HOMEOSTASIS-0.430
- OXIDATIVE_PHOSPHORYLATION-0.430
- GLYCOLYSIS-0.370
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.360
- ADIPOGENESIS-0.320
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | AUR-AFUM-TTP1-A-1-0-R-A741-41 | — | D | 0.911 |
| 2 | 20020052.LumA | — | A | 0.904 |
| 3 | SRR8518276 | — | A | 0.896 |
| 4 | s0122234 | — | — | 0.888 |
| 5 | AUR-AER4-TTP1-A-1-0-R-A741-41 | — | D | 0.880 |
| 6 | MBCProject_5856_T0B_RNA | — | A | 0.874 |
| 7 | TCGA-E2-A15I-01A-21R-A137-07 | — | B | 0.862 |
| 8 | TCGA-AO-A0JG-01A-31R-A084-07 | — | A | 0.851 |
| 9 | TCGA-44-5645-01A-01R-1628-07 | — | cohortA1 | 0.851 |
| 10 | SRR1313099 | — | A | 0.849 |