SAMN03290937
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.300
- PROTEIN_SECRETION+0.200
- BILE_ACID_METABOLISM+0.000
- DNA_REPAIR+0.000
- FATTY_ACID_METABOLISM+0.000
- HEME_METABOLISM+0.000
- MYC_TARGETS_V1+0.000
- OXIDATIVE_PHOSPHORYLATION+0.000
- PEROXISOME+0.000
- SPERMATOGENESIS+0.000
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.600
- COMPLEMENT-0.500
- E2F_TARGETS-0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.500
- G2M_CHECKPOINT-0.500
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- NOTCH_SIGNALING-0.500
- APICAL_JUNCTION-0.400
- COAGULATION-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR35579848 | — | B | 0.909 |
| 2 | TCGA-37-4129-01A-01R-1100-07 | — | cohortSC | 0.901 |
| 3 | MBCProject_0343_T1_RNA | — | B | 0.899 |
| 4 | MDT-AP-2960 | Med | Medulloblastoma | 0.895 |
| 5 | TCGA-E9-A245-01A-22R-A16F-07 | — | B | 0.890 |
| 6 | c8b9a438-4194-4243-a738-4e0bd4184f19 | — | — | 0.886 |
| 7 | SRR10900001 | — | — | 0.880 |
| 8 | MDT-AP-2991 | Med | Medulloblastoma | 0.879 |
| 9 | SRR35579800 | — | B | 0.875 |
| 10 | 5231481f-3568-46e3-aa4d-cbd9c4e95383 | — | — | 0.875 |