SRR35579848
— · B
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- B
- subtype
- B
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.310
- OXIDATIVE_PHOSPHORYLATION+0.280
- SPERMATOGENESIS+0.100
- BILE_ACID_METABOLISM+0.080
- DNA_REPAIR+0.080
- HEDGEHOG_SIGNALING+0.080
- ESTROGEN_RESPONSE_EARLY+0.060
- HEME_METABOLISM+0.060
- UNFOLDED_PROTEIN_RESPONSE+0.010
- ADIPOGENESIS+0.000
Top 10 suppressed
- INTERFERON_GAMMA_RESPONSE-0.700
- INTERFERON_ALPHA_RESPONSE-0.670
- IL6_JAK_STAT3_SIGNALING-0.620
- ALLOGRAFT_REJECTION-0.610
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.610
- INFLAMMATORY_RESPONSE-0.590
- TNFA_SIGNALING_VIA_NFKB-0.570
- CHOLESTEROL_HOMEOSTASIS-0.450
- KRAS_SIGNALING_UP-0.450
- COMPLEMENT-0.440
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR25617889 | — | B | 0.945 |
| 2 | MBCProject_0343_T1_RNA | — | B | 0.942 |
| 3 | TCGA-B6-A0X4-01A-11R-A109-07 | — | B | 0.917 |
| 4 | SAMN03290937 | — | — | 0.909 |
| 5 | SRR35579847 | — | B | 0.909 |
| 6 | AUR-AFE9-TTM1-A-1-1-R-A742-41 | — | B | 0.901 |
| 7 | SRR29022828 | — | B | 0.900 |
| 8 | MDT-AP-2960 | Med | Medulloblastoma | 0.898 |
| 9 | TCGA-A2-A4S0-01A-21R-A266-07 | — | B | 0.896 |
| 10 | SRR1442356 | GTEX | — | 0.895 |