SRR1455060
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.235
- PANCREAS_BETA_CELLS+0.002
- SPERMATOGENESIS-0.006
- G2M_CHECKPOINT-0.045
- MITOTIC_SPINDLE-0.086
- E2F_TARGETS-0.093
- PI3K_AKT_MTOR_SIGNALING-0.099
- APICAL_SURFACE-0.112
- APICAL_JUNCTION-0.149
- UV_RESPONSE_DN-0.151
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.593
- OXIDATIVE_PHOSPHORYLATION-0.533
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.493
- TGF_BETA_SIGNALING-0.486
- INTERFERON_GAMMA_RESPONSE-0.476
- TNFA_SIGNALING_VIA_NFKB-0.467
- ANGIOGENESIS-0.444
- ADIPOGENESIS-0.442
- APOPTOSIS-0.412
- FATTY_ACID_METABOLISM-0.409
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR627299 | GTEX | — | 0.976 |
| 2 | SRR627453 | GTEX | — | 0.966 |
| 3 | SRR1471374 | GTEX | — | 0.965 |
| 4 | SRR598009 | GTEX | — | 0.964 |
| 5 | SRR1467813 | GTEX | — | 0.963 |
| 6 | BS_J71N7D09 | medulloblastoma | — | 0.962 |
| 7 | SRR1485789 | GTEX | — | 0.962 |
| 8 | SRR12696758 | — | — | 0.959 |
| 9 | SRR1436444 | GTEX | — | 0.958 |
| 10 | SRR1439850 | GTEX | — | 0.958 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 2 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| KRAS_SIGNALING_DN | 0.235 | Remibrutinib | — uncovered |
| PANCREAS_BETA_CELLS | 0.002 | Cobimetinib | — uncovered |