SRR2681702
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- APICAL_JUNCTION+0.200
- IL2_STAT5_SIGNALING+0.200
- XENOBIOTIC_METABOLISM+0.200
- ADIPOGENESIS+0.100
- ALLOGRAFT_REJECTION+0.100
- APICAL_SURFACE+0.100
- BILE_ACID_METABOLISM+0.100
- FATTY_ACID_METABOLISM+0.100
- GLYCOLYSIS+0.100
- KRAS_SIGNALING_DN+0.100
Top 10 suppressed
- PROTEIN_SECRETION-0.500
- MYC_TARGETS_V1-0.400
- ANDROGEN_RESPONSE-0.300
- ANGIOGENESIS-0.300
- TGF_BETA_SIGNALING-0.300
- UNFOLDED_PROTEIN_RESPONSE-0.300
- UV_RESPONSE_DN-0.300
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.200
- G2M_CHECKPOINT-0.200
- MITOTIC_SPINDLE-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R94 | — | — | 0.768 |
| 2 | SRR2932837 | — | — | 0.691 |
| 3 | MNG559 | — | — | 0.685 |
| 4 | R215 | — | — | 0.681 |
| 5 | R84 | — | — | 0.649 |
| 6 | SJEPD001534_D1.RNA-Seq | EPN | Posterior Fossa EPN | 0.645 |
| 7 | R30 | — | — | 0.639 |
| 8 | MNG1106 | — | — | 0.636 |
| 9 | BS_BKR4E30C | high-grade glioma | — | 0.631 |
| 10 | SRR4195694 | — | — | 0.628 |