SRR1397008
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TNFA_SIGNALING_VIA_NFKB+0.414
- IL6_JAK_STAT3_SIGNALING+0.408
- INFLAMMATORY_RESPONSE+0.390
- INTERFERON_GAMMA_RESPONSE+0.376
- INTERFERON_ALPHA_RESPONSE+0.368
- APICAL_SURFACE+0.351
- KRAS_SIGNALING_DN+0.333
- COAGULATION+0.323
- ESTROGEN_RESPONSE_EARLY+0.299
- COMPLEMENT+0.294
Top 10 suppressed
- MYC_TARGETS_V1-0.621
- PROTEIN_SECRETION-0.547
- UNFOLDED_PROTEIN_RESPONSE-0.486
- DNA_REPAIR-0.460
- OXIDATIVE_PHOSPHORYLATION-0.457
- E2F_TARGETS-0.450
- MYC_TARGETS_V2-0.445
- G2M_CHECKPOINT-0.365
- MTORC1_SIGNALING-0.289
- ANDROGEN_RESPONSE-0.209
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1352954 | GTEX | — | 0.946 |
| 2 | SRR818057 | GTEX | — | 0.933 |
| 3 | TCGA-A2-A0CO-01A-13R-A22K-07 | — | A | 0.925 |
| 4 | SRR1440082 | GTEX | — | 0.924 |
| 5 | SRR1472150 | GTEX | — | 0.923 |
| 6 | SRR1316940 | GTEX | — | 0.923 |
| 7 | SRR598124 | GTEX | — | 0.921 |
| 8 | TCGA-69-8453-01A-12R-2326-07 | — | cohortA1 | 0.920 |
| 9 | sclcA055A_S52.txt | — | cohortMD2 | 0.918 |
| 10 | BS_R244Z0WX | pilocytic astrocytoma | — | 0.918 |