SRR23303775
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- WNT_BETA_CATENIN_SIGNALING+0.030
- KRAS_SIGNALING_DN-0.080
- SPERMATOGENESIS-0.080
- MITOTIC_SPINDLE-0.120
- MYC_TARGETS_V2-0.160
- HEME_METABOLISM-0.210
- BILE_ACID_METABOLISM-0.260
- NOTCH_SIGNALING-0.270
- INTERFERON_ALPHA_RESPONSE-0.280
- UV_RESPONSE_DN-0.280
Top 10 suppressed
- ANGIOGENESIS-0.620
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.580
- MYC_TARGETS_V1-0.550
- MTORC1_SIGNALING-0.540
- CHOLESTEROL_HOMEOSTASIS-0.530
- IL6_JAK_STAT3_SIGNALING-0.520
- TNFA_SIGNALING_VIA_NFKB-0.520
- INFLAMMATORY_RESPONSE-0.510
- OXIDATIVE_PHOSPHORYLATION-0.500
- E2F_TARGETS-0.490
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR650134 | — | — | 0.963 |
| 2 | AUR-AFE5-TTM9-A-1-1-R-A742-41 | — | D | 0.936 |
| 3 | SRR650166 | — | — | 0.934 |
| 4 | AUR-AERW-TTP1-B-1-0-R-A741-41 | — | D | 0.929 |
| 5 | SRR650197 | — | — | 0.929 |
| 6 | SRR23303752 | — | — | 0.927 |
| 7 | SRR12696758 | — | — | 0.924 |
| 8 | SRR12696768 | — | — | 0.924 |
| 9 | SRR627299 | GTEX | — | 0.923 |
| 10 | SRR1388504 | GTEX | — | 0.922 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 1 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| WNT_BETA_CATENIN_SIGNALING | 0.030 | Inavolisib | — uncovered |