MDT-AP-3068
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- age_years
- 31.5
- sex
- M
- new_clusters
- S1
- umap1_2d
- -0.060918296
- umap2_2d
- -11.75104728
- umap1_3d
- -2.487088681
- umap2_3d
- 0.316472489
- umap3_3d
- 5.595002995
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- COAGULATION+0.140
- BILE_ACID_METABOLISM+0.130
- PANCREAS_BETA_CELLS+0.080
- KRAS_SIGNALING_DN+0.050
- UV_RESPONSE_DN+0.050
- KRAS_SIGNALING_UP+0.040
- PROTEIN_SECRETION+0.040
- APOPTOSIS-0.010
- HEDGEHOG_SIGNALING-0.010
- P53_PATHWAY-0.030
Top 10 suppressed
- G2M_CHECKPOINT-0.470
- E2F_TARGETS-0.450
- MTORC1_SIGNALING-0.430
- CHOLESTEROL_HOMEOSTASIS-0.320
- MYC_TARGETS_V2-0.320
- GLYCOLYSIS-0.310
- UNFOLDED_PROTEIN_RESPONSE-0.300
- DNA_REPAIR-0.290
- PI3K_AKT_MTOR_SIGNALING-0.270
- IL6_JAK_STAT3_SIGNALING-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-3086 | Med | Medulloblastoma | 0.900 |
| 2 | SRR13311172 | — | — | 0.886 |
| 3 | SRR1516040 | — | — | 0.883 |
| 4 | SRR8518163 | — | A | 0.873 |
| 5 | C3N-02950 | — | cohortA1 | 0.872 |
| 6 | TCGA-44-6148-01A-11R-1755-07 | — | cohortA1 | 0.871 |
| 7 | SRR8942979 | — | — | 0.868 |
| 8 | TCGA-55-A4DG-01A-11R-A24H-07 | — | cohortA1 | 0.866 |
| 9 | SRR6013517 | — | cohortA1 | 0.863 |
| 10 | b03ebc32.a177.44c7.8b02.fcd6560712f2 | — | cohortA1 | 0.862 |