SRR9879288
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.500
- MYC_TARGETS_V2+0.460
- G2M_CHECKPOINT+0.370
- UNFOLDED_PROTEIN_RESPONSE+0.350
- HEDGEHOG_SIGNALING+0.340
- MTORC1_SIGNALING+0.320
- E2F_TARGETS+0.310
- PROTEIN_SECRETION+0.290
- CHOLESTEROL_HOMEOSTASIS+0.200
- UV_RESPONSE_UP+0.180
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.580
- INTERFERON_GAMMA_RESPONSE-0.520
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.490
- INTERFERON_ALPHA_RESPONSE-0.480
- ANGIOGENESIS-0.440
- COAGULATION-0.430
- COMPLEMENT-0.430
- TNFA_SIGNALING_VIA_NFKB-0.380
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.320
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-77-7141-01A-11R-2045-07 | — | cohortSQ2 | 0.925 |
| 2 | TCGA-60-2722-01A-01R-0851-07 | — | cohortSQ2 | 0.902 |
| 3 | C3N-04155 | — | cohortSQ2 | 0.884 |
| 4 | E3A67B7B-7427-4C11-912B-166451072767 | — | — | 0.883 |
| 5 | TCGA-22-5477-01A-01R-1635-07 | — | cohortSQ2 | 0.883 |
| 6 | TCGA-NK-A5CR-01A-11R-A26W-07 | — | cohortSQ2 | 0.876 |
| 7 | SRR6013533 | — | cohortSQ2 | 0.874 |
| 8 | TCGA-77-A5G3-01A-31R-A27Q-07 | — | cohortSQ2 | 0.874 |
| 9 | SRR8526717 | — | cohortMD1 | 0.871 |
| 10 | 236350e9-8964-42ae-8880-d2f2281ff993 | — | — | 0.869 |