TCGA-78-7163-01A-12R-2066-07
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
- age_years
- 60
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.380
- OXIDATIVE_PHOSPHORYLATION+0.350
- FATTY_ACID_METABOLISM+0.250
- HEME_METABOLISM+0.250
- ANDROGEN_RESPONSE+0.240
- GLYCOLYSIS+0.240
- BILE_ACID_METABOLISM+0.230
- ADIPOGENESIS+0.210
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.190
- PEROXISOME+0.180
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.530
- E2F_TARGETS-0.520
- G2M_CHECKPOINT-0.510
- MYC_TARGETS_V2-0.400
- ALLOGRAFT_REJECTION-0.340
- ANGIOGENESIS-0.330
- WNT_BETA_CATENIN_SIGNALING-0.330
- MITOTIC_SPINDLE-0.320
- MYC_TARGETS_V1-0.300
- INFLAMMATORY_RESPONSE-0.290
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-0044 | Med | Medulloblastoma | 0.884 |
| 2 | MBCProject_3946_T5B_RNA | — | C | 0.868 |
| 3 | TCGA-B6-A0RO-01A-22R-A084-07 | — | C | 0.864 |
| 4 | SRR8518189 | — | F | 0.860 |
| 5 | TCGA-D8-A1JN-01A-11R-A13Q-07 | — | C | 0.848 |
| 6 | SRR8943024 | — | — | 0.844 |
| 7 | BS_9M5XJ10G | Med | Medulloblastoma | 0.843 |
| 8 | TCGA-BH-A18S-01A-11R-A12D-07 | — | B | 0.841 |
| 9 | MBCProject_3946_T5A_RNA | — | C | 0.823 |
| 10 | C3L-01889 | — | cohortA2 | 0.810 |