SJEPD030292_D1.RNA-Seq
EPN · Supratentorial EPN
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- Supratentorial EPN
- cancer_type
- EPN
- subtype
- Supratentorial EPN
- age_years
- 4.32
- fusion
- ZFTA_RELA
- e1_e2
- E1
- umap1_2d
- -2.370445684
- umap2_2d
- 1.766046615
- umap1_3d
- -0.187158002
- umap2_3d
- 4.00537749
- umap3_3d
- -2.504173501
- dataset
- EPN-StJude
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.630
- INTERFERON_GAMMA_RESPONSE+0.610
- ALLOGRAFT_REJECTION+0.530
- MYC_TARGETS_V1+0.490
- OXIDATIVE_PHOSPHORYLATION+0.470
- PROTEIN_SECRETION+0.440
- MTORC1_SIGNALING+0.400
- DNA_REPAIR+0.350
- IL6_JAK_STAT3_SIGNALING+0.350
- INFLAMMATORY_RESPONSE+0.350
Top 10 suppressed
- MYOGENESIS-0.330
- KRAS_SIGNALING_DN-0.290
- APICAL_SURFACE-0.260
- WNT_BETA_CATENIN_SIGNALING-0.260
- ESTROGEN_RESPONSE_EARLY-0.190
- APICAL_JUNCTION-0.160
- ESTROGEN_RESPONSE_LATE-0.160
- PANCREAS_BETA_CELLS-0.150
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.130
- SPERMATOGENESIS-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SJEPD030367_D2.RNA-Seq | EPN | Supratentorial EPN | 0.898 |
| 2 | BS_XF0ZX2B3 | Supratentorial Ependymoma | — | 0.895 |
| 3 | D9385661-DBBA-4AF7-B7E6-857BF84CF7CD | — | — | 0.888 |
| 4 | MNG1186 | — | — | 0.883 |
| 5 | 2E040577-EA0C-4876-9F43-A180DA38F733 | — | — | 0.882 |
| 6 | BS_XF0ZX2B3 | EPN | Supratentorial EPN | 0.876 |
| 7 | TCGA-CV-6938-01A-11R-1915-07 | — | — | 0.871 |
| 8 | 4942E435-61E6-4A43-B031-4E08F0B41186 | — | — | 0.871 |
| 9 | E97A62A3-E4D3-435C-9165-C0075358578E | — | — | 0.869 |
| 10 | F42071CA-8794-4C79-8B02-8D48C70E8BA1 | — | — | 0.869 |