TCGA-56-8504-01A-11R-2403-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 74
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.610
- MYC_TARGETS_V2+0.600
- G2M_CHECKPOINT+0.570
- MYC_TARGETS_V1+0.510
- INTERFERON_ALPHA_RESPONSE+0.450
- MTORC1_SIGNALING+0.450
- OXIDATIVE_PHOSPHORYLATION+0.440
- FATTY_ACID_METABOLISM+0.420
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.410
- WNT_BETA_CATENIN_SIGNALING+0.390
Top 10 suppressed
- TNFA_SIGNALING_VIA_NFKB-0.360
- IL6_JAK_STAT3_SIGNALING-0.320
- PANCREAS_BETA_CELLS-0.280
- COAGULATION-0.210
- KRAS_SIGNALING_UP-0.210
- INFLAMMATORY_RESPONSE-0.180
- UV_RESPONSE_DN-0.170
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.140
- TGF_BETA_SIGNALING-0.130
- COMPLEMENT-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-GU-AATQ-01A-11R-A39I-07 | — | — | 0.830 |
| 2 | MNG358 | — | — | 0.822 |
| 3 | TCGA-85-8277-01A-11R-2296-07 | — | cohortSQ2 | 0.816 |
| 4 | C3N-03204 | — | cohortSQ2 | 0.804 |
| 5 | TCGA-39-5016-01A-01R-1443-07 | — | cohortSQ2 | 0.793 |
| 6 | MBCProject_0170_T1_RNA | — | C | 0.790 |
| 7 | TCGA-66-2727-01A-01R-0980-07 | — | cohortSQ2 | 0.790 |
| 8 | SRR6013552 | — | cohortSQ2 | 0.788 |
| 9 | 61882705-0498-43FE-83CA-77B0FC2702E3 | — | — | 0.784 |
| 10 | MNG8 | — | — | 0.784 |