SRR655864
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.257
- DNA_REPAIR+0.153
- MYC_TARGETS_V2+0.138
- MITOTIC_SPINDLE+0.134
- E2F_TARGETS+0.118
- UNFOLDED_PROTEIN_RESPONSE+0.108
- MYC_TARGETS_V1+0.097
- G2M_CHECKPOINT+0.084
- PI3K_AKT_MTOR_SIGNALING+0.080
- HEME_METABOLISM+0.070
Top 10 suppressed
- ANGIOGENESIS-0.564
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.558
- TNFA_SIGNALING_VIA_NFKB-0.553
- INFLAMMATORY_RESPONSE-0.517
- COAGULATION-0.478
- ALLOGRAFT_REJECTION-0.468
- APOPTOSIS-0.461
- KRAS_SIGNALING_UP-0.433
- INTERFERON_GAMMA_RESPONSE-0.429
- IL6_JAK_STAT3_SIGNALING-0.419
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR662871 | GTEX | — | 0.970 |
| 2 | SRR661290 | GTEX | — | 0.968 |
| 3 | SRR664819 | GTEX | — | 0.967 |
| 4 | SRR657325 | GTEX | — | 0.967 |
| 5 | SRR659331 | GTEX | — | 0.966 |
| 6 | SRR819999 | GTEX | — | 0.963 |
| 7 | SRR657997 | GTEX | — | 0.962 |
| 8 | SRR1355061 | GTEX | — | 0.962 |
| 9 | SRR1317323 | GTEX | — | 0.961 |
| 10 | SRR1321244 | GTEX | — | 0.960 |