SRR820468
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- DNA_REPAIR+0.173
- MITOTIC_SPINDLE+0.076
- KRAS_SIGNALING_DN+0.059
- PI3K_AKT_MTOR_SIGNALING+0.034
- MYC_TARGETS_V1+0.013
- UNFOLDED_PROTEIN_RESPONSE-0.001
- WNT_BETA_CATENIN_SIGNALING-0.008
- PEROXISOME-0.011
- HEME_METABOLISM-0.023
- OXIDATIVE_PHOSPHORYLATION-0.054
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.539
- TNFA_SIGNALING_VIA_NFKB-0.532
- INFLAMMATORY_RESPONSE-0.509
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.505
- ANGIOGENESIS-0.487
- INTERFERON_GAMMA_RESPONSE-0.475
- IL6_JAK_STAT3_SIGNALING-0.445
- ALLOGRAFT_REJECTION-0.432
- KRAS_SIGNALING_UP-0.420
- COAGULATION-0.419
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1441224 | GTEX | — | 0.986 |
| 2 | SRR1360038 | GTEX | — | 0.984 |
| 3 | SRR1319672 | GTEX | — | 0.983 |
| 4 | SRR1359367 | GTEX | — | 0.981 |
| 5 | SRR1356204 | GTEX | — | 0.981 |
| 6 | SRR1471417 | GTEX | — | 0.981 |
| 7 | SRR1490568 | GTEX | — | 0.980 |
| 8 | SRR1464305 | GTEX | — | 0.979 |
| 9 | SRR807657 | GTEX | — | 0.979 |
| 10 | SRR817190 | GTEX | — | 0.977 |