msclc569389_S35.txt
— · cohortMD1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortMD1
- subtype
- cohortMD1
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.510
- KRAS_SIGNALING_DN+0.400
- SPERMATOGENESIS+0.320
- MYOGENESIS+0.070
- BILE_ACID_METABOLISM+0.020
- COAGULATION-0.010
- KRAS_SIGNALING_UP-0.070
- ANGIOGENESIS-0.120
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.140
- APICAL_SURFACE-0.160
Top 10 suppressed
- MYC_TARGETS_V1-0.630
- UNFOLDED_PROTEIN_RESPONSE-0.610
- PROTEIN_SECRETION-0.600
- OXIDATIVE_PHOSPHORYLATION-0.580
- MTORC1_SIGNALING-0.560
- DNA_REPAIR-0.550
- MYC_TARGETS_V2-0.540
- ANDROGEN_RESPONSE-0.530
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.530
- TGF_BETA_SIGNALING-0.530
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MNG598 | — | — | 0.985 |
| 2 | TCGA-CF-A3MF-01A-12R-A21D-07 | — | — | 0.984 |
| 3 | MNG597 | — | — | 0.981 |
| 4 | 08e3d239-3d8a-4eee-9e08-ac2bcb3f2619 | — | — | 0.980 |
| 5 | MNG555 | — | — | 0.980 |
| 6 | c7d31245-5d71-4a23-8a33-4f83c4718e20 | — | — | 0.978 |
| 7 | MDT-AP-0706 | Med | Medulloblastoma | 0.978 |
| 8 | MNG1131 | — | — | 0.977 |
| 9 | MNG90 | — | — | 0.975 |
| 10 | MNG599 | — | — | 0.975 |