SRR2016961
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.310
- PANCREAS_BETA_CELLS+0.290
- BILE_ACID_METABOLISM+0.120
- FATTY_ACID_METABOLISM+0.120
- HEME_METABOLISM+0.100
- P53_PATHWAY+0.100
- PEROXISOME+0.100
- ADIPOGENESIS+0.060
- WNT_BETA_CATENIN_SIGNALING+0.000
- XENOBIOTIC_METABOLISM-0.020
Top 10 suppressed
- E2F_TARGETS-0.590
- G2M_CHECKPOINT-0.520
- ALLOGRAFT_REJECTION-0.460
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.450
- MITOTIC_SPINDLE-0.440
- IL6_JAK_STAT3_SIGNALING-0.420
- INTERFERON_ALPHA_RESPONSE-0.400
- MYC_TARGETS_V2-0.400
- INTERFERON_GAMMA_RESPONSE-0.390
- HEDGEHOG_SIGNALING-0.380
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR12202450 | — | — | 0.911 |
| 2 | TCGA-CF-A5U8-01A-11R-A28M-07 | — | — | 0.906 |
| 3 | C3L-03721 | — | cohortA2 | 0.896 |
| 4 | 1d0437fc-c8ad-47be-822d-b95ad10f0e4a | — | — | 0.891 |
| 5 | TCGA-MP-A5C7-01A-11R-A262-07 | — | cohortA2 | 0.886 |
| 6 | MDT-AP-0349 | Med | Medulloblastoma | 0.877 |
| 7 | SRR4296076 | — | cohortA1 | 0.873 |
| 8 | TCGA-37-4129-01A-01R-1100-07 | — | cohortSC | 0.873 |
| 9 | TCGA-E2-A1B4-01A-11R-A12P-07 | — | B | 0.872 |
| 10 | SRR975556 | — | — | 0.867 |