SRR13780248
— · cohortSC
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSC
- subtype
- cohortSC
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.390
- E2F_TARGETS+0.290
- MITOTIC_SPINDLE+0.270
- G2M_CHECKPOINT+0.200
- HEDGEHOG_SIGNALING+0.160
- KRAS_SIGNALING_DN+0.130
- ESTROGEN_RESPONSE_EARLY+0.120
- SPERMATOGENESIS+0.120
- ESTROGEN_RESPONSE_LATE+0.100
- APICAL_JUNCTION-0.020
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.510
- IL6_JAK_STAT3_SIGNALING-0.500
- OXIDATIVE_PHOSPHORYLATION-0.460
- TNFA_SIGNALING_VIA_NFKB-0.460
- COMPLEMENT-0.410
- INTERFERON_GAMMA_RESPONSE-0.410
- INFLAMMATORY_RESPONSE-0.400
- MYC_TARGETS_V1-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.390
- TGF_BETA_SIGNALING-0.380
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | X3bde0089.a1cb.45b8.879b.4408eaa25707 | — | cohortMD1 | 0.892 |
| 2 | SRR12696770 | — | — | 0.874 |
| 3 | SRR22247242 | — | cohortSC | 0.870 |
| 4 | MNG899 | — | — | 0.860 |
| 5 | MNG284 | — | — | 0.857 |
| 6 | ULC0549T_S21 | — | cohortSC | 0.857 |
| 7 | BS_YMAJC22S | low-grade glioma | — | 0.855 |
| 8 | BS_4W68NV3M | medulloblastoma | — | 0.853 |
| 9 | BS_JT82QGXF | medulloblastoma | — | 0.852 |
| 10 | BS_J71N7D09 | medulloblastoma | — | 0.849 |