TCGA-18-4086-01A-01R-1100-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 64
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.600
- E2F_TARGETS+0.550
- OXIDATIVE_PHOSPHORYLATION+0.480
- MTORC1_SIGNALING+0.460
- G2M_CHECKPOINT+0.450
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.440
- MYC_TARGETS_V2+0.430
- DNA_REPAIR+0.360
- UNFOLDED_PROTEIN_RESPONSE+0.280
- PI3K_AKT_MTOR_SIGNALING+0.260
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.280
- ANGIOGENESIS-0.170
- NOTCH_SIGNALING-0.170
- COAGULATION-0.130
- INTERFERON_GAMMA_RESPONSE-0.100
- KRAS_SIGNALING_UP-0.070
- WNT_BETA_CATENIN_SIGNALING-0.070
- ESTROGEN_RESPONSE_EARLY-0.030
- MYOGENESIS-0.030
- BILE_ACID_METABOLISM-0.010
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-0322 | Med | Medulloblastoma | 0.872 |
| 2 | TCGA-22-5473-01A-01R-1635-07 | — | cohortSQ2 | 0.847 |
| 3 | TCGA-18-3411-01A-01R-0980-07 | — | cohortSQ2 | 0.837 |
| 4 | SRR12696742 | — | — | 0.835 |
| 5 | TCGA-66-2759-01A-01R-0851-07 | — | cohortSQ2 | 0.833 |
| 6 | TCGA-66-2727-01A-01R-0980-07 | — | cohortSQ2 | 0.833 |
| 7 | TCGA-66-2783-01A-01R-1201-07 | — | cohortSQ2 | 0.829 |
| 8 | TCGA-46-3765-01A-01R-0980-07 | — | cohortSQ2 | 0.828 |
| 9 | SRR23303771 | — | — | 0.827 |
| 10 | TCGA-60-2723-01A-01R-0851-07 | — | cohortSQ2 | 0.823 |