0b5850f2-648a-4dad-a48d-82150c12acb4
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.100
- PANCREAS_BETA_CELLS+0.100
- BILE_ACID_METABOLISM+0.000
- KRAS_SIGNALING_DN+0.000
- MYC_TARGETS_V1+0.000
- ANDROGEN_RESPONSE-0.100
- HEME_METABOLISM-0.100
- IL6_JAK_STAT3_SIGNALING-0.100
- KRAS_SIGNALING_UP-0.100
- P53_PATHWAY-0.100
Top 10 suppressed
- E2F_TARGETS-0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.500
- TGF_BETA_SIGNALING-0.500
- CHOLESTEROL_HOMEOSTASIS-0.400
- G2M_CHECKPOINT-0.400
- HEDGEHOG_SIGNALING-0.400
- PROTEIN_SECRETION-0.400
- ANGIOGENESIS-0.300
- APICAL_JUNCTION-0.300
- COMPLEMENT-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | sclc265549_S73.txt | — | cohortMD1 | 0.890 |
| 2 | SRR650197 | — | — | 0.870 |
| 3 | aMVAC.P_005_TURBT_S223 | — | — | 0.870 |
| 4 | SRR23303775 | — | — | 0.865 |
| 5 | SRR8943010 | — | — | 0.864 |
| 6 | SRR13311179 | — | — | 0.856 |
| 7 | SRR8943017 | — | — | 0.856 |
| 8 | TCGA-CF-A27C-01A-11R-A16R-07 | — | — | 0.854 |
| 9 | TCGA-E7-A3Y1-01A-11R-A22U-07 | — | — | 0.853 |
| 10 | SRR1516072 | — | — | 0.851 |