TCGA-KQ-A41O-01A-12R-A352-07
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- overall_survival_months
- 50.52562418
- os_event
- false
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.280
- SPERMATOGENESIS+0.210
- PANCREAS_BETA_CELLS+0.200
- MYC_TARGETS_V2+0.060
- E2F_TARGETS+0.010
- G2M_CHECKPOINT-0.050
- ESTROGEN_RESPONSE_LATE-0.060
- CHOLESTEROL_HOMEOSTASIS-0.080
- DNA_REPAIR-0.080
- BILE_ACID_METABOLISM-0.140
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.630
- INTERFERON_GAMMA_RESPONSE-0.590
- ANGIOGENESIS-0.510
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.490
- IL6_JAK_STAT3_SIGNALING-0.490
- INFLAMMATORY_RESPONSE-0.490
- PROTEIN_SECRETION-0.480
- ALLOGRAFT_REJECTION-0.470
- COMPLEMENT-0.470
- TNFA_SIGNALING_VIA_NFKB-0.460
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR650166 | — | — | 0.950 |
| 2 | SRR650150 | — | — | 0.936 |
| 3 | TCGA-E5-A4U1-01A-11R-A31N-07 | — | — | 0.934 |
| 4 | TCGA-FJ-A3ZF-01A-11R-A23N-07 | — | — | 0.931 |
| 5 | SRR1467813 | GTEX | — | 0.930 |
| 6 | SRR4195695 | — | — | 0.928 |
| 7 | sclc265549_S73.txt | — | cohortMD1 | 0.927 |
| 8 | SRR25617918 | — | B | 0.926 |
| 9 | SRR1797291 | — | cohortSC | 0.925 |
| 10 | SRR1348021 | GTEX | — | 0.925 |