SRR1477080
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.473
- PANCREAS_BETA_CELLS+0.453
- MYOGENESIS+0.162
- APICAL_SURFACE+0.141
- XENOBIOTIC_METABOLISM+0.122
- SPERMATOGENESIS+0.112
- HEDGEHOG_SIGNALING+0.100
- BILE_ACID_METABOLISM+0.098
- ESTROGEN_RESPONSE_LATE+0.074
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.043
Top 10 suppressed
- MYC_TARGETS_V1-0.599
- PROTEIN_SECRETION-0.521
- UNFOLDED_PROTEIN_RESPONSE-0.508
- MYC_TARGETS_V2-0.504
- INTERFERON_ALPHA_RESPONSE-0.502
- E2F_TARGETS-0.484
- G2M_CHECKPOINT-0.452
- DNA_REPAIR-0.450
- INTERFERON_GAMMA_RESPONSE-0.406
- MTORC1_SIGNALING-0.404
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1500868 | GTEX | — | 0.966 |
| 2 | SRR1388378 | GTEX | — | 0.964 |
| 3 | BS_KPT2WPHW | Ganglioglioma | — | 0.957 |
| 4 | BS_C7N3J4NW | high-grade glioma | — | 0.956 |
| 5 | SRR1337909 | GTEX | — | 0.956 |
| 6 | SRR1431307 | GTEX | — | 0.956 |
| 7 | SRR1418127 | GTEX | — | 0.953 |
| 8 | SRR1485542 | GTEX | — | 0.951 |
| 9 | SRR1444678 | GTEX | — | 0.951 |
| 10 | SRR1314958 | GTEX | — | 0.951 |