MDT-AP-2628
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 8.040000000000001
- os_event
- false
- age_years
- 11
- sex
- M
- new_clusters
- C5
- umap1_2d
- 5.608960269
- umap2_2d
- 4.912295703
- umap1_3d
- 2.031812442
- umap2_3d
- -0.39342571
- umap3_3d
- -1.589213308
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.360
- XENOBIOTIC_METABOLISM+0.310
- KRAS_SIGNALING_DN+0.290
- ESTROGEN_RESPONSE_LATE+0.270
- COAGULATION+0.230
- IL6_JAK_STAT3_SIGNALING+0.180
- ALLOGRAFT_REJECTION+0.160
- INFLAMMATORY_RESPONSE+0.160
- MYOGENESIS+0.160
- SPERMATOGENESIS+0.160
Top 10 suppressed
- MYC_TARGETS_V2-0.470
- UNFOLDED_PROTEIN_RESPONSE-0.410
- ANDROGEN_RESPONSE-0.380
- MYC_TARGETS_V1-0.380
- MITOTIC_SPINDLE-0.360
- G2M_CHECKPOINT-0.340
- TGF_BETA_SIGNALING-0.340
- UV_RESPONSE_DN-0.320
- PROTEIN_SECRETION-0.310
- NOTCH_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
5 twins match this tumor's tissue · 5 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-0572 | Med | Medulloblastoma | 0.849 |
| 2 | MDT-AP-2120 | Med | Medulloblastoma | 0.845 |
| 3 | SRR5088872 | — | — | 0.829 |
| 4 | ERR2598288 | fetal | fetal | 0.826 |
| 5 | MDT-AP-2579 | Med | Medulloblastoma | 0.823 |
| 6 | ERR2598335 | fetal | fetal | 0.818 |
| 7 | ERR2598269 | fetal | fetal | 0.814 |
| 8 | SRR1443895 | GTEX | — | 0.813 |
| 9 | MDT-AP-0720 | Med | Medulloblastoma | 0.810 |
| 10 | SJEPD006_D.RNA-Seq | EPN | Supratentorial EPN | 0.810 |