TCGA-LT-A5Z6-01A-11R-A28M-07
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- overall_survival_months
- 15.57161629
- os_event
- false
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- SPERMATOGENESIS+0.260
- E2F_TARGETS+0.250
- KRAS_SIGNALING_DN+0.210
- PANCREAS_BETA_CELLS+0.210
- BILE_ACID_METABOLISM+0.170
- G2M_CHECKPOINT+0.140
- PEROXISOME+0.000
- FATTY_ACID_METABOLISM-0.010
- ESTROGEN_RESPONSE_LATE-0.040
- HEME_METABOLISM-0.100
Top 10 suppressed
- ANGIOGENESIS-0.640
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.630
- TGF_BETA_SIGNALING-0.550
- INTERFERON_ALPHA_RESPONSE-0.510
- TNFA_SIGNALING_VIA_NFKB-0.510
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.500
- WNT_BETA_CATENIN_SIGNALING-0.500
- INTERFERON_GAMMA_RESPONSE-0.470
- MYC_TARGETS_V2-0.470
- MYC_TARGETS_V1-0.450
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-FJ-A3ZF-01A-11R-A23N-07 | — | — | 0.927 |
| 2 | TCGA-BB-4224-01A-01R-1436-07 | — | — | 0.917 |
| 3 | SRR8943038 | — | — | 0.909 |
| 4 | SRR10899998 | — | — | 0.908 |
| 5 | MDT-AP-1252 | Med | Medulloblastoma | 0.905 |
| 6 | TCGA-E7-A7PW-01A-11R-A352-07 | — | — | 0.903 |
| 7 | sclcD1531109_S55.txt | — | cohortSC | 0.893 |
| 8 | SRR10842347 | — | — | 0.890 |
| 9 | TCGA-CR-7374-01A-11R-2016-07 | — | — | 0.890 |
| 10 | TCGA-KQ-A41O-01A-12R-A352-07 | — | — | 0.886 |