R311
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- overall_survival_months
- 54
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.580
- BILE_ACID_METABOLISM+0.320
- PEROXISOME+0.320
- INTERFERON_GAMMA_RESPONSE+0.300
- APICAL_SURFACE+0.250
- FATTY_ACID_METABOLISM+0.210
- ALLOGRAFT_REJECTION+0.110
- KRAS_SIGNALING_DN+0.110
- XENOBIOTIC_METABOLISM+0.080
- DNA_REPAIR+0.070
Top 10 suppressed
- PROTEIN_SECRETION-0.440
- TGF_BETA_SIGNALING-0.440
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.400
- TNFA_SIGNALING_VIA_NFKB-0.370
- MTORC1_SIGNALING-0.350
- UNFOLDED_PROTEIN_RESPONSE-0.340
- ANGIOGENESIS-0.290
- HYPOXIA-0.290
- E2F_TARGETS-0.280
- G2M_CHECKPOINT-0.270
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR2932837 | — | — | 0.808 |
| 2 | TCGA-CV-A461-01A-41R-A266-07 | — | — | 0.804 |
| 3 | TCGA-DK-A6B6-01A-11R-A30C-07 | — | — | 0.802 |
| 4 | DRR168519 | — | — | 0.797 |
| 5 | SJEPD019_D.RNA-Seq | EPN | Posterior Fossa EPN | 0.797 |
| 6 | SRR35579841 | — | B | 0.783 |
| 7 | SRR33532821 | — | D | 0.778 |
| 8 | TCGA-78-7147-01A-11R-2039-07 | — | cohortA1 | 0.771 |
| 9 | SJEPD027_D.RNA-Seq | EPN | Posterior Fossa EPN | 0.770 |
| 10 | MNG1106 | — | — | 0.766 |