SAMN03290900
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.300
- NOTCH_SIGNALING+0.200
- UV_RESPONSE_DN+0.200
- APICAL_JUNCTION+0.100
- COAGULATION+0.100
- MYOGENESIS+0.100
- WNT_BETA_CATENIN_SIGNALING+0.100
- ANGIOGENESIS+0.000
- APICAL_SURFACE+0.000
- BILE_ACID_METABOLISM+0.000
Top 10 suppressed
- MTORC1_SIGNALING-0.600
- MYC_TARGETS_V2-0.600
- E2F_TARGETS-0.500
- G2M_CHECKPOINT-0.500
- MYC_TARGETS_V1-0.500
- UNFOLDED_PROTEIN_RESPONSE-0.500
- CHOLESTEROL_HOMEOSTASIS-0.400
- GLYCOLYSIS-0.400
- PANCREAS_BETA_CELLS-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 4f0b1ac0-c503-4852-9a44-cb4231f4b17b | — | — | 0.860 |
| 2 | C3N-01409 | — | cohortA1 | 0.859 |
| 3 | AUR-AFUN-TTM1-A-1-0-R-A743-41 | — | A | 0.857 |
| 4 | AUR-AFUN-TTP1-A-1-0-R-A741-41 | — | D | 0.846 |
| 5 | SRR1313107 | — | F | 0.842 |
| 6 | ULC0424T_S49 | — | cohortA1 | 0.839 |
| 7 | TCGA-B6-A0X7-01A-11R-A10J-07 | — | A | 0.837 |
| 8 | X84315f98.9366.4174.be54.3cdd1fd9db07 | — | cohortA1 | 0.835 |
| 9 | SRR1313120 | — | A | 0.832 |
| 10 | SRR6013544 | — | cohortA1 | 0.830 |