SRR1440119
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.159
- DNA_REPAIR+0.140
- KRAS_SIGNALING_DN+0.058
- WNT_BETA_CATENIN_SIGNALING+0.046
- SPERMATOGENESIS+0.025
- MITOTIC_SPINDLE+0.002
- UV_RESPONSE_UP-0.007
- PI3K_AKT_MTOR_SIGNALING-0.010
- UNFOLDED_PROTEIN_RESPONSE-0.028
- MYC_TARGETS_V1-0.046
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.542
- INFLAMMATORY_RESPONSE-0.475
- INTERFERON_GAMMA_RESPONSE-0.466
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.458
- IL6_JAK_STAT3_SIGNALING-0.440
- TNFA_SIGNALING_VIA_NFKB-0.416
- KRAS_SIGNALING_UP-0.410
- TGF_BETA_SIGNALING-0.409
- COMPLEMENT-0.408
- COAGULATION-0.406
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1499982 | GTEX | — | 0.983 |
| 2 | SRR1441224 | GTEX | — | 0.982 |
| 3 | SRR1464305 | GTEX | — | 0.981 |
| 4 | SRR1434803 | GTEX | — | 0.981 |
| 5 | SRR1359367 | GTEX | — | 0.978 |
| 6 | SRR1360038 | GTEX | — | 0.977 |
| 7 | SRR1400375 | GTEX | — | 0.977 |
| 8 | SRR820468 | GTEX | — | 0.977 |
| 9 | SRR1490568 | GTEX | — | 0.977 |
| 10 | SRR1479510 | GTEX | — | 0.976 |