SRR1313108
— · B
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- B
- subtype
- B
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- DNA_REPAIR+0.070
- INTERFERON_ALPHA_RESPONSE+0.060
- MITOTIC_SPINDLE+0.060
- SPERMATOGENESIS+0.060
- BILE_ACID_METABOLISM+0.000
- ESTROGEN_RESPONSE_LATE+0.000
- ESTROGEN_RESPONSE_EARLY-0.030
- HEDGEHOG_SIGNALING-0.060
- KRAS_SIGNALING_DN-0.060
- MYC_TARGETS_V2-0.100
Top 10 suppressed
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.570
- ANGIOGENESIS-0.470
- MTORC1_SIGNALING-0.460
- MYC_TARGETS_V1-0.460
- TNFA_SIGNALING_VIA_NFKB-0.450
- ANDROGEN_RESPONSE-0.420
- CHOLESTEROL_HOMEOSTASIS-0.410
- OXIDATIVE_PHOSPHORYLATION-0.410
- PROTEIN_SECRETION-0.400
- INFLAMMATORY_RESPONSE-0.390
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR23303775 | — | — | 0.916 |
| 2 | 20040121.LumB | — | D | 0.910 |
| 3 | 20050097.LumA | — | B | 0.909 |
| 4 | SRR1313096 | — | B | 0.905 |
| 5 | SRR650134 | — | — | 0.896 |
| 6 | SRR664854 | GTEX | — | 0.896 |
| 7 | SRR1388504 | GTEX | — | 0.892 |
| 8 | SRR25617904 | — | B | 0.891 |
| 9 | TCGA-L9-A7SV-01A-11R-A39D-07 | — | cohortA1 | 0.891 |
| 10 | MNG1271 | — | — | 0.891 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 4 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| DNA_REPAIR | 0.070 | Idelalisib | — uncovered |
| INTERFERON_ALPHA_RESPONSE | 0.060 | Inavolisib | — uncovered |
| MITOTIC_SPINDLE | 0.060 | Inavolisib | — uncovered |
| SPERMATOGENESIS | 0.060 | Inavolisib | — uncovered |