SRR1516088
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TGF_BETA_SIGNALING+0.420
- WNT_BETA_CATENIN_SIGNALING+0.350
- UV_RESPONSE_DN+0.210
- OXIDATIVE_PHOSPHORYLATION+0.130
- HEME_METABOLISM+0.050
- INTERFERON_ALPHA_RESPONSE+0.050
- PROTEIN_SECRETION+0.050
- APICAL_JUNCTION+0.020
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.050
- BILE_ACID_METABOLISM-0.060
Top 10 suppressed
- E2F_TARGETS-0.630
- G2M_CHECKPOINT-0.490
- MTORC1_SIGNALING-0.490
- ALLOGRAFT_REJECTION-0.430
- INFLAMMATORY_RESPONSE-0.410
- IL6_JAK_STAT3_SIGNALING-0.400
- ANGIOGENESIS-0.390
- MYC_TARGETS_V2-0.380
- TNFA_SIGNALING_VIA_NFKB-0.370
- SPERMATOGENESIS-0.360
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR12202454 | — | — | 0.899 |
| 2 | SRR1516060 | — | — | 0.837 |
| 3 | SRR8942980 | — | — | 0.832 |
| 4 | TCGA-E7-A6MF-01A-12R-A32O-07 | — | — | 0.829 |
| 5 | TCGA-78-7167-01A-11R-2066-07 | — | cohortA2 | 0.820 |
| 6 | SRR1516046 | — | — | 0.820 |
| 7 | TCGA-55-8087-01A-11R-2241-07 | — | cohortA1 | 0.817 |
| 8 | TCGA-B6-A0X7-01A-11R-A10J-07 | — | A | 0.814 |
| 9 | R247 | — | — | 0.811 |
| 10 | SRR25617883 | — | B | 0.809 |