SRR12202449
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PANCREAS_BETA_CELLS+0.350
- OXIDATIVE_PHOSPHORYLATION+0.260
- TGF_BETA_SIGNALING+0.200
- PROTEIN_SECRETION+0.100
- UV_RESPONSE_DN+0.090
- WNT_BETA_CATENIN_SIGNALING+0.080
- ADIPOGENESIS+0.030
- KRAS_SIGNALING_DN+0.020
- HEME_METABOLISM+0.010
- P53_PATHWAY-0.050
Top 10 suppressed
- G2M_CHECKPOINT-0.610
- E2F_TARGETS-0.590
- CHOLESTEROL_HOMEOSTASIS-0.490
- INTERFERON_ALPHA_RESPONSE-0.430
- MITOTIC_SPINDLE-0.430
- MTORC1_SIGNALING-0.380
- ANGIOGENESIS-0.370
- IL6_JAK_STAT3_SIGNALING-0.370
- GLYCOLYSIS-0.340
- INTERFERON_GAMMA_RESPONSE-0.330
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR8943006 | — | — | 0.869 |
| 2 | TCGA-CF-A5U8-01A-11R-A28M-07 | — | — | 0.862 |
| 3 | SRR8943008 | — | — | 0.861 |
| 4 | SRR8942980 | — | — | 0.857 |
| 5 | SRR8943010 | — | — | 0.852 |
| 6 | SRR1516063 | — | — | 0.845 |
| 7 | SRR2016961 | — | — | 0.845 |
| 8 | TCGA-37-4129-01A-01R-1100-07 | — | cohortSC | 0.831 |
| 9 | MNG1181 | — | — | 0.828 |
| 10 | SRR1516050 | — | — | 0.823 |